Alternative Names
- collagen, type VI, alpha 1 [HGNC]
SNPs
| rsID | SNPedia | dbSNP | Chips | Special Name | Wild (plus) | Risk (plus) | Frequency | PubMed IDs |
|---|---|---|---|---|---|---|---|---|
| rs2277814 |  | A45 | AA | A=0.141170 | ||||
| rs1053312 | | | A45 | GG | AA | A=0.283412 | 12958705 | |
| rs797045477 | | | A5 | AA | GG | |||
| rs794727060 | | | A5 | TT | CC | |||
| rs794727028 | | | A5 | GG | AA | |||
| rs786205555 | | | A5 | AA | CC | |||
| rs78224483 | | A5 | CC | TT | T=0.017079 | |||
| rs73159606 | | A5 | AA | A=0.004364 | ||||
| rs7283989 | | A5 | GG | AA | G=0.484064 | |||
| rs398123644 | | | A5 | GG | AA | |||
| rs398123643 | | | A5 | GG | AA | |||
| rs398123639 | | | A5 | AA | GG | |||
| rs35796750 | | | A5 | CC | TT | C=0.432368 | 22012643 23013106 22894972 | |
| rs2839077 | | A5 | TT | CC | T=0.452303 | |||
| rs200770631 | | A5 | AA | A=0.000008 | ||||
| rs1980982 | | A5 | TT | T=0.400420 | ||||
| rs189623561 | | A5 | CC | TT | T=0.000016 | |||
| rs186775751 | | A5 | TT | CC | C=0.000131 | |||
| rs145838277 | | A5 | GG | AA | A=0.000036 | |||
| rs144671871 | | A5 | AA | A=0.007860 | ||||
| rs144358858 | | A5 | GG | AA | A=0.000147 | |||
| rs140547835 | | A5 | GG | TT | T=0.018276 | |||
| rs138884734 | | A5 | TT | CC | C=0.003817 | |||
| rs13879 | | A5 | CC | TT | T=0.020281 | |||
| rs138673993 | | A5 | GG | AA | A=0.000033 | |||
| rs121912938 | | | A5 | GG | AA | |||
| rs117529466 | | A5 | AA | A=0.003727 | ||||
| rs886044535 | | | A | GG | AA | |||
| rs886044231 | | | A | GG | AA | |||
| rs886043700 | | | A | GG | AA | |||
| rs886043521 | | | A | GG | AA | A=0.000008 | ||
| rs886043354 | | | A | |||||
| rs886043351 | | | A | GG | AA | |||
| rs886043330 | | | A | GG | AA | |||
| rs886043321 | | | A | GG | TT | |||
| rs886043291 | | | A | |||||
| rs886043147 | | | A | |||||
| rs886043114 | | | A | |||||
| rs886043106 | | | A | GG | AA | C=0.00003 | ||
| rs886042902 | | | A | GG | AA | |||
| rs886042856 | | | A | GG | AA | |||
| rs886042748 | | | A | GG | AA | |||
| rs886042684 | | | A | GG | AA | |||
| rs886042354 | | | A | GG | AA | |||
| rs886041383 | | | A | GG | AA | |||
| rs878854398 | | | A | AA | DD | D=0.000004 | ||
| rs794727121 | | | A | GG | AA | |||
| rs770099663 | | A | TT | T=0.000025 | ||||
| rs764556767 | | | A | GG | AA | |||
| rs760768642 | | A | TT | T=0.000127 | ||||
| rs760649238 | | A | GG | AA | A=0.000041 | |||
| rs759834554 | | A | TT | T=0.000016 | ||||
| rs540554122 | | A | TT | T=0.000008 | ||||
| rs529770550 | | A | GG | AA | A=0.000051 | |||
| rs398123640 | | | A | GG | AA | |||
| rs398123638 | | A | GG | G=0.000240 | ||||
| rs398123631 | | | A | GG | AA | |||
| rs373948031 | | A | CC | TT | T=0.000084 | |||
| rs373486149 | | A | TT | T=0.000048 | ||||
| rs372581026 | | A | CC | TT | T=0.000187 | |||
| rs368651226 | | A | TT | T=0.000088 | ||||
| rs367832752 | | A | AA | A=0.000088 | ||||
| rs267606746 | | | A | GG | AA | |||
| rs200959957 | | A | GG | AA | A=0.000069 | |||
| rs200095847 | | A | CC | TT | T=0.000279 | |||
| rs184666690 | | A | AA | A=0.009803 | ||||
| rs150432347 | | A | CC | TT | T=0.000696 | |||
| rs150378645 | | A | AA | A=0.000470 | ||||
| rs149338158 | | A | AA | GG | G=0.000303 | |||
| rs148962954 | | A | GG | AA | A=0.000235 | |||
| rs148630223 | | A | CC | TT | T=0.000124 | |||
| rs148561616 | | A | GG | AA | A=0.000060 | |||
| rs146662894 | | A | AA | A=0.000934 | ||||
| rs145849970 | | A | GG | AA | A=0.000223 | |||
| rs143695871 | | A | CC | TT | T=0.000289 | |||
| rs143502850 | | A | CC | AA | A=0.000839 | |||
| rs142882745 | | A | CC | TT | T=0.000634 | |||
| rs140427635 | | A | CC | TT | T=0.000235 | |||
| rs139018148 | | A | CC | TT | T=0.000016 | |||
| rs138899581 | | A | TT | CC | C=0.000970 | |||
| rs121912939 | | | A | GG | AA | |||
| rs121912936 | | | A | AA | GG | G=0.000024 | ||
| rs121912935 | | | A | GG | AA | A=0.00004 | ||
| rs117583120 | | A | GG | G=0.000820 | ||||
| rs11553518 | | A | AA | GG | G=0.028699 | |||
| rs1064797287 | | | A | GG | AA | |||
| rs1064793840 | | | A | GG | AA | |||
| rs1057522053 | | | A | CC | AA | |||
| rs1057521152 | | | A | GG | AA | |||
| rs1057520625 | | | A | GG | TT | |||
| rs1057519174 | | | A | AA | GG | |||
| rs1057518005 | | | A | GG | CC | A=0.000005 | ||
| rs9254 | | 4 | AA | GG | A=0.117968 | |||
| rs8129814 | | 4 | CC | C=0.485673 | ||||
| rs4819179 | | 4 | TT | T=0.340827 | ||||
| rs17551710 | | 4 | GG | TT | T=0.172321 | |||
| rs11553519 | | 4 | AA | A=0.040528 | ||||
| rs886042646 | | | ||||||
| rs797044458 | | | GG | |||||
| rs797044457 | | | CC | |||||
| rs797044456 | | | TT | CC | ||||
| rs28930072 | | | ||||||
| rs201093313 | | | CC | TT | T=0.000048 | |||
| rs121912937 | | | CC | GG | T=0.000025 | |||
| rs121912934 | | | GG | TT | A=0.000004 |
PubMed References
-
PMID:23013106 [rs35796750]
PMID:23869615 [HGNC]
PMID:22894972 [rs35796750]
PMID:12958705 [rs1053312]
PMID:22012643 [rs35796750]
Other References
-
SNPedia=COL6A1
ClinVar=COL6A1
GeneCards=COL6A1
Wikipedia=COL6A1
Google=COL6A1